What's New on the AnimalGenome.org Web Site
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| Major updates / new additions: |
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| What's new on the NAGRP animal genome web site (#2, 2024) |
| New, Apr 29, 2024 |
| Version 2024-04-23 of Vertebrate Trait (VT) ontology data is released with 3,792 terms and other updates. |
| Update, Apr 23, 2024 |
| Update (version 2.208) of Clinical Measurement Ontology (CMO) data with 3,925 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Apr 22, 2024 |
| Version 9.4 of Livestock Breed Ontology (LBO) data with 1,123 terms is released. |
| Update, Apr 22, 2024 |
| Update (version 2.207) of Clinical Measurement Ontology (CMO) data with 3,918 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Apr 15, 2024 |
| Version 2024-04-15 of Vertebrate Trait (VT) ontology data is released with 3,787 terms and other updates. |
| Update, Apr 15, 2024 |
| New webfaces are being developed for the AnimalGenome.ORG website. The new front page is the start of a re-design of the website for better support of combined NRSP8 activities, for better compatibility of mobile device views, and to facilitate simpler information access to the site. |
| New, Apr 02, 2024 |
| Update (version 2.206) of Clinical Measurement Ontology (CMO) data with 3,916 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Apr 01, 2024 |
| Version 2024-04-01 of Vertebrate Trait (VT) ontology data is released with 3,778 terms and other updates. |
| Update, Apr 01, 2024 |
| Update (version 2.205) of Clinical Measurement Ontology (CMO) data with 3,916 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Mar 26, 2024 |
| Version 2024-03-22 of Vertebrate Trait (VT) ontology data is released with 3,772 terms and other updates. |
| Update, Mar 22, 2024 |
| Version 2024-03-08 of Vertebrate Trait (VT) ontology data is released with 3,772 terms. |
| Update, Mar 8, 2024 |
| Version 9.3 of Livestock Breed Ontology (LBO) data with 1,124 terms is released. |
| Update, Mar 8, 2024 |
| Update (version 2.203) of Clinical Measurement Ontology (CMO) data with 3,910 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Mar 8, 2024 |
| Version 2024-02-29 of Vertebrate Trait (VT) ontology data is released with 3,754 terms. |
| Update, Mar 4, 2024 |
| Version 2024-02-27 of Vertebrate Trait (VT) ontology data is released with 3,748 terms. |
| Update, Feb 27, 2024 |
| Update (version 2.202) of Clinical Measurement Ontology (CMO) data with 3,908 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Feb 27, 2024 |
| Version 9.2 of Livestock Breed Ontology (LBO) data with 1,123 terms is released. |
| Update, Feb 13, 2024 |
| An update (version 2.201) of Clinical Measurement Ontology (CMO) data with 3,907 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Feb 12, 2024 |
| The NRSP8 program home page is revised to reflect the new changes geared towards building applied genomic capacity for animal industries. The specific aims of the new NRSP8 and new program leaders/coordinaors are listed on the same page. |
| New, Feb 10, 2024 |
| Presentation slides from 2024 FAANG Workshop are available on FAANG website. |
| New, Feb 08, 2024 |
| Version 2024-02-07 of Vertebrate Trait (VT) ontology data is released with 3,744 terms. |
| Update, Feb 07, 2024 |
| Version 9.1 of Livestock Breed Ontology (LBO) data with 1,122 terms is released. |
| Update, Feb 05, 2024 |
| Vertebrate Trait (VT) ontology data release has a new version naming format denoted with numeric dates like in 'yyyy-mm-dd'. For example its version 13.15 is now 2024-01-17. VT Version 2024-01-17 is released with 3,742 terms. |
| New, Jan 17, 2024 |
| What's new on the NAGRP animal genome web site (#1, 2024) |
| New, Jan 3, 2024 |
New database releases have been made: Animal QTLdb Release #52, and Animal CorrDB Release #20.
| | New, Dec 27, 2023 | |
| As we have planned (see QTLdb release #51), a total of 13,309 linkage-map–based QTL/association data curated to the Animal QTLdb during 1999 and 2021 have been deposited to Github as of Dec. 17, 2023. This step represents the separation of the legacy data from the current QTLdb, as we move forward with the sequence-based genome maps and SNP-based analysis results. These legact data were on 6 livestock species: cattle, chicken, horse, pigs, sheep, and rainbow trout. |
| New, Dec 18, 2023 |
| New cattle genome assembly ARS-UCD2.0 was released on July 1, 2023. As the SNP mappings on this build version is not available on the current dbSNP release (August 2023) we have performed a liftover of 96,180,721 SNPs from ARS-UCD1.0 build with our in-house procedures to accommodate the upcoming QTLdb data releases to include ARS-UCD2.0 build. |
| Update, Dec 12, 2023 |
| Version 13.14 of the Vertebrate Trait (VT) ontology data with 3,741 terms and several structural changes and updates. |
| Update, Nov 20, 2023 |
| Version 8.10 of Livestock Breed Ontology (LBO) data with 1,121 terms is released. |
| Update, Nov 20, 2023 |
| Version 13.13 of the Vertebrate Trait (VT) ontology data with 3,739 terms and several structural changes and updates. |
| Update, Nov 16, 2023 |
| Version 8.9 of Livestock Breed Ontology (LBO) data with 1,120 terms is released. |
| Update, Oct 26, 2023 |
| Version 13.12 of the Vertebrate Trait (VT) ontology data with 3,733 terms and several structural changes and updates. |
| Update, Oct 25, 2023 |
| An update (version 2.195) of Clinical Measurement Ontology (CMO) data with 3,897 terms from Bioportal is ported to QTLdb/CorrDB curation environment and ontology browsers and viewers. |
| Update, Oct 23, 2023 |
| Started a process to retire inactive web pages, services, and materials.
https://www.animalgenome.org/aquaculture
https://www.animalgenome.org/pig
https://www.animalgenome.org/cattle
https://www.animalgenome.org/horse
https://www.animalgenome.org/poultry
https://www.animalgenome.org/sheep
https://www.animalgenome.org/bioinfo/service
https://www.animalgenome.org/bioinfo/service/computer
https://www.animalgenome.org/other/
https://www.animalgenome.org/other/Joomla
https://www.animalgenome.org/share/
https://www.animalgenome.org/share/critt
https://www.animalgenome.org/share/visions
https://www.animalgenome.org/share/survey
https://www.animalgenome.org/share/letter
https://www.animalgenome.org/blast
Reorganized:
https://www.animalgenome.org/repository/ https://www.animalgenome.org/tools/repository
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| Update, Oct 7, 2023 |
| As part of our effords to "ontologize" livestock trait terms in the process of data annotation into the QTLdb/CorrDB, two additional ontologies have been introduced for ontology term mappings: Uberon anatomy/tissue ontology, and rat disease ontology. The outcomes from this work may be visible to the public in the near future. |
| Update, Oct 3, 2023 |
| Obsoleted websites for NRSP8 cattle, chicken, horse, pig, and sheep coordination programs, and placed the website materials on archive. |
| Update, Oct 2, 2023 |
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