The Species Coordinators: Their Role in the National
Animal Genome Research Program |
Max Rothschild, Swine Genome Coordinator Jerry Dodgson,
Poultry Genome Coordinator Noelle Cockett, Sheep Genome Coordinator
Jim Womack, Cattle Geonome Coordinator Ernie Bailey, Horse Genome
Coordinator |
Background
The Species Genome Coordinators,
representing cattle, pigs, sheep, horses and poultry, play an important
and integral role in efforts of animal genome researchers efforts to
identify map and understand genes affecting traits of economic importance
in our domestic livestock species. The Coordinators got there start in the
National Animal Genome Research Program (NAGRP) which had its beginnings
in the 1990 Farm Bill. Initial funds were supplied by CSRS but were later
taken "off-the-top" from the Agricultural Experiment Stations to fund a
coordinated effort by university and government scientists and the
mechanism selected to help in this endeavor was the development of
coordinators. An initial competitive request for proposals was developed
for species genome coordinators in cattle, sheep, swine and poultry. The
rationale for coordinators, based on the already existing models for plant
genomes, was that gene mapping is inherently more efficient and productive
when researchers share resources and populations, and because most
agricultural geneticists operate on comparatively limited budgets and can
more easily access modern DNA-based technologies as a group effort. These
principles have been most effectively demonstrated in international
consortia such as the CEPH human DNA panel, the European project to
sequence yeast chromosome 3 and the EEC PiGMaP project. After receiving
competitive grant proposals from several individuals Jim Womack was chosen
as Cattle Coordinator, Noelle Cockett as Sheep Coordinator, Max Rothschild
as Swine Coordinator, and the team of Lyman Crittenden, Hans Cheng and
Jerry Dodgson took on the role of Poultry Coordinator(s). More recently
Ernie Bailey was chosen as Horse Genome Coordinator. |
Duties and role of the coordinator
First and
foremost the Coordinators are to be facilitators for genome research. The
activities of the Coordinators include curator of the genome map(s),
coordinating genome database development, providing shared materials and
resources, coordinating with international gene map leaders, and assisting
the individual researchers that make up the species technical committees.
Coordinators do not develop research priorities or use funds for their
research programs. |
Accomplishments
Coordinators have provided a
variety of commonly used resources to everyone in the animal genome
community. Initially, they provided reference panel DNAs which were
crucial for the national and international mapping efforts. They have
provided microsatellite primer kits for mapping and QTL analyses. While
all the species programs differ some in this regards the efforts in pigs
for microsatellite primers illustrate the value in sharing. A total of 295
primers pairs were first supplied for labs using conventional methods and
more recently over 150 primer pairs have been supplied for 2 different
fluorescent typing systems. In total over 40 labs have some of the
primers. More recently differential display primers have been provided for
expression studies.
Coordinators have leveraged their funds for
databases by working with their international partners who have
contributed considerable support to develop and maintain useful public
databases for each species. The coordinators serve as coeditors for these
databases. They also have developed useful WWW homepages which supply
researchers, students and the general public with information on the
individual programs and links to other programs. Communication is a major
component of the Coordinators' efforts and these efforts have included
reference maps, newsletters, computer discussion groups, support for
meetings and travel, and educational talks to industry and research
groups. Some of the coordinated efforts have been supported by donations
from the various animal industries. In all, the Coordinators for each
species commit 25-30% of their time to work with and help others in their
genome efforts. |
Outlook
The overall rate of progress in mapping the
genomes of our domestic livestock animals has been impressive, although it
is impossible to fully distinguish the accomplishments of NAGRP
participants from other animal geneticists, both here and abroad. The
future of the NAGRP will depend on whether support is available through
CSREES for renewal of NRSP-8 beyond 1998. We presently lack at least three
critical features of the existing human and mouse maps: adequate marker
density for fine structure mapping, physical maps based on ordered contigs
assembled from large insert DNA libraries, and close alignment of
conserved syntenic groups throughout our maps to those of the
"information-rich" mouse and human genomes. These are among the primary
goals for the future of the NAGRP and animal genomics in general. It is
clear that our common interests in new technologies, QTL, and agricultural
relevance (not to mention a common lack of adequate financial support)
will make increased cooperation mutually beneficial. The Genome
Coordinators for Pigs, Cattle, Sheep, Poultry and Horses that are chosen
for the next 5 years will play an ever increasing role in helping to
facilitate and improve collaboration and communication among genome
researchers.
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