A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
ATP2B2   ENSSSCG00000011574 13:55811337-55871957    
ATP2B3   ENSSSCG00000012769 X:122393823-122429082   FP102397,CH242-79A9,X:122391234-122447282
(Clone quality: bE79A9 on chr=X; Num_of_Contigs=14; )
ATP2B4 ENSSSCG00000015273 9:62098645-62151712   CU655999,CH242-299D21,9:62090071-62174337
(Clone quality: bE299D21 on chr=9; Num_of_Contigs=9; )
ATP2C1   ENSSSCG00000011183 13:1249887-1328579   CU468391,CH242-198D4,13:1217404-1336536
(Clone quality: bE198D4 on chr=13; Num_of_Contigs=2; )
ATP2C2   ENSSSCG00000002671 6:2688377-2735738   CU929750,CH242-270I23,6:2633205-2758929
(Clone quality: bE270I23 on chr=6; Num_of_Contigs=2; )
ATP4A ENSSSCG00000002902 6:30223955-30233620    
ATP4B ENSSSCG00000009561 11:79008423-79013507    
ATP4B location ⇒ 11:79008571-79008420   FP236199,CH242-118I8,11:78997628-79011393
(Clone quality: bE118I8 on chr=11; Num_of_Contigs=8; )
ATP4B location ⇒ 11:79008813-79008650   FP236199,CH242-118I8,11:78997628-79011393
(Clone quality: bE118I8 on chr=11; Num_of_Contigs=8; )
ATP4B location ⇒ 11:79013071-79012941   FP236199,CH242-118I8,11:79011494-79031009
(Clone quality: bE118I8 on chr=11; Num_of_Contigs=8; )
ATP4B location ⇒ 11:79013528-79013396   FP236199,CH242-118I8,11:79011494-79031009
(Clone quality: bE118I8 on chr=11; Num_of_Contigs=8; )
ATP5A1 ENSSSCG00000004499 1:99745958-99757458    
ATP5A1 location ⇒ 1:99745962-99746042   CU570743,CH242-347K22,1:99745142-99748450
(Clone quality: bE347K22 on chr=1; Num_of_Contigs=10; )
ATP5A1 location ⇒ 1:99751675-99751851   CU570743,CH242-347K22,1:99748551-99768479
(Clone quality: bE347K22 on chr=1; Num_of_Contigs=10; )
ATP5A1 location ⇒ 1:99752309-99752456   CU570743,CH242-347K22,1:99748551-99768479
(Clone quality: bE347K22 on chr=1; Num_of_Contigs=10; )
ATP5A1 location ⇒ 1:99753264-99753490   CU570743,CH242-347K22,1:99748551-99768479
(Clone quality: bE347K22 on chr=1; Num_of_Contigs=10; )
ATP5B   ENSSSCG00000000405 5:21065668-21073312   CU468457,CH242-203P23,5:21058663-21129178
(Clone quality: bE203P23 on chr=5; Num_of_Contigs=4; )
ATP5D   ENSSSCG00000013431 2:46464450-46466764   CU929580,CH242-161G11,2:46462241-46469291
(Clone quality: bE161G11 on chr=2; Num_of_Contigs=11; )
ATP5E   ENSSSCG00000007524 17:61787508-61791474 CR956646,CH242-247L10,17:61655968-61825296
(No clone quality info on bE247L10) 		 
ATP5F1   ENSSSCG00000006789 4:113256712-113267882   CU311186,CH242-230C12,4:113251594-113376287
(Clone quality: bE230C12 on chr=4; Num_of_Contigs=3; )
ATP5G1   ENSSSCG00000017544 12:22664940-22667646   CU928816,CH242-243D3,12:22660971-22676496
(Clone quality: bE243D3 on chr=12; Num_of_Contigs=4; )
ATP5G3   ENSSSCG00000015973 15:76039382-76042926   CU694603,CH242-31D5,15:76024022-76113924
(Clone quality: bE31D5 on chr=15; Num_of_Contigs=5; )
ATP5I   ENSSSCG00000009024 8:68045253-68045435   CU466350,CH242-443A19,8:68043482-68069709
(Clone quality: bE443A19 on chr=8; Num_of_Contigs=5; )
ATP5J2 location ⇒ 3:5622686-5622807   FP103031,CH242-519M18,3:5617363-5631809
(Clone quality: bE519M18 on chr=3; Num_of_Contigs=12; )
ATP5J2 location ⇒ 3:5809525-5809571   FP102617,CH242-199P18,3:5759765-5834782
(Clone quality: bE199P18 on chr=3; Num_of_Contigs=6; )
ATP5J2 location ⇒ 3:5815528-5815649   FP102617,CH242-199P18,3:5759765-5834782
(Clone quality: bE199P18 on chr=3; Num_of_Contigs=6; )
ATP5L   ENSSSCG00000015096 9:44591824-44600359   CU914235,CH242-177G19,9:44486144-44604301
(Clone quality: bE177G19 on chr=9; Num_of_Contigs=2; )
ATP5O   ENSSSCG00000012042 13:139184603-139191352   CU633388,CH242-288H9,13:139184370-139201880
(Clone quality: bE288H9 on chr=13; Num_of_Contigs=7; )
ATP5S   ENSSSCG00000005017 1:188442159-188453154   CU222525,CH242-175F12,1:188296962-188466073
(Clone quality: bE175F12 on chr=1; Num_of_Contigs=2; )
ATP5SL   ENSSSCG00000003009 6:33947819-33952777   FP236582,CH242-238L13,6:33921264-33956509
(Clone quality: bE238L13 on chr=6; Num_of_Contigs=11; )
ATP6AP1L   ENSSSCG00000014132 2:79976481-80145727    
ATP6AP2   ENSSSCG00000012247 X:35985462-36014108   FP067431,CH242-266E24,X:35968800-36049228
(Clone quality: bE266E24 on chr=X; Num_of_Contigs=2; )
ATP6V0A2 ENSSSCG00000009766 14:29364203-29408693   CU468658,CH242-245F7,14:29355652-29557150
(Clone quality: bE245F7 on chr=14; Num_of_Contigs=1; )
ATP6V0A2 location ⇒ 14:29365750-29365578   CU468658,CH242-245F7,14:29355652-29557150
(Clone quality: bE245F7 on chr=14; Num_of_Contigs=1; )
ATP6V0A2 location ⇒ 14:29370994-29370874   CU468658,CH242-245F7,14:29355652-29557150
(Clone quality: bE245F7 on chr=14; Num_of_Contigs=1; )
ATP6V0A2 location ⇒ 14:29373233-29373111   CU468658,CH242-245F7,14:29355652-29557150
(Clone quality: bE245F7 on chr=14; Num_of_Contigs=1; )
ATP6V0A2 location ⇒ 14:29373988-29373824   CU468658,CH242-245F7,14:29355652-29557150
(Clone quality: bE245F7 on chr=14; Num_of_Contigs=1; )
ATP6V0A4   ENSSSCG00000016516 18:9146945-9186243   FP236752,CH242-135G1,18:9146556-9190823
(Clone quality: bE135G1 on chr=18; Num_of_Contigs=4; )
ATP6V0C   ENSSSCG00000008056 3:36846110-36852218    
ATP6V0D1   ENSSSCG00000002776 6:13082481-13124323   CU929737,CH242-250E5,6:13062455-13202086
(Clone quality: bE250E5 on chr=6; Num_of_Contigs=3; )
ATP6V0D2   ENSSSCG00000006138 4:52454752-52509961   CU639431,CH242-112A22,4:52429951-52607836
(Clone quality: bE112A22 on chr=4; Num_of_Contigs=2; )
ATP6V0E1   ENSSSCG00000016990 16:48691321-48697547   CU915673,CH242-496E1,16:48677396-48698363
(Clone quality: bE496E1 on chr=16; Num_of_Contigs=8; )
ATP6V1A ENSSSCG00000011916 13:109085986-109149852    
ATP6V1A location ⇒ 13:109086360-109086075   CU468040,CH242-381J18,13:109079908-109105247
(Clone quality: bE381J18 on chr=13; Num_of_Contigs=5; )
ATP6V1A location ⇒ 13:109088340-109088166   CU468040,CH242-381J18,13:109079908-109105247
(Clone quality: bE381J18 on chr=13; Num_of_Contigs=5; )
ATP6V1A location ⇒ 13:109097383-109097175   CU468040,CH242-381J18,13:109079908-109105247
(Clone quality: bE381J18 on chr=13; Num_of_Contigs=5; )
ATP6V1A location ⇒ 13:109114325-109114109   CU915398,CH242-257L23,13:109105248-109145731
(Clone quality: bE257L23 on chr=13; Num_of_Contigs=2; )
ATP6V1B2   ENSSSCG00000009602 14:4009079-4037068   CT737416,CH242-177M15,14:4002126-4156991
(Clone quality: bE177M15 on chr=14; Num_of_Contigs=1; )
ATP6V1C1   ENSSSCG00000006054 4:34413480-34463880    
ATP6V1C2   ENSSSCG00000008634 3:116602235-116652362    
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Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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