Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
35
Number of QTL / associations found:
4,595
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
6312.07640
18
9e-41
1.221429e-40
Chromosome 1
13213.07855
18
9e-41
1.221429e-40
Chromosome 2
146.73715
18
3.194097e-22
4.045856e-22
Chromosome 3
7599.86325
18
9e-41
1.221429e-40
Chromosome 4
2883.67625
18
9e-41
1.221429e-40
Chromosome 5
14.01890
18
0.7278584
7.278584e-01
Chromosome 6
257.21360
18
2.773479e-44
8.782683e-44
Chromosome 7
10798.50520
18
9e-41
1.221429e-40
Chromosome 8
96.64795
18
9.068348e-13
1.013521e-12
Chromosome 9
1220.73035
18
4.042875e-248
7.681463e-247
Chromosome 10
2553.92200
18
9e-41
1.221429e-40
Chromosome 11
56.97860
18
6.238014e-06
6.584570e-06
Chromosome 12
1017.32680
18
1.390229e-204
1.320718e-203
Chromosome 13
577.28650
18
5.412065e-111
2.056585e-110
Chromosome 14
128.88295
18
8.66454e-19
1.028914e-18
Chromosome 15
789.12225
18
6.554619e-156
3.113444e-155
Chromosome 16
2009.72730
18
9e-41
1.221429e-40
Chromosome 17
969.37015
18
2.450846e-194
1.552202e-193
Chromosome 18
2952.89925
18
9e-41
1.221429e-40
Chi-squared (χ2) test: Which of the 35 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
46.43569
34
0.07573815
1.395176e-01
Average daily gain
180.46943
34
7.252147e-22
3.626073e-21
Average daily ham weight gain
10.9974
34
0.999937
9.999990e-01
Average daily lean meat gain
41.15597
34
0.1859099
3.098498e-01
Average daily loin weight gain
10.9974
34
0.999937
9.999990e-01
Body circumference
711.56424
34
1.009343e-127
1.766350e-126
Body depth
37.74801
34
0.3018621
4.802352e-01
Body height
427.08189
34
1.758218e-69
2.051254e-68
Body length
1270.71306
34
4.044679e-245
1.415638e-243
Body mass index
90.54574
34
4.932662e-07
1.438693e-06
Body weight
101.94246
34
1.043366e-08
3.651781e-08
Body weight linear
7.92234
34
0.999999
9.999990e-01
Body width
25.82392
34
0.8417574
9.999990e-01
Bone mineral content
45.38888
34
0.09170353
1.604812e-01
Bone mineral density
49.48615
34
0.04190655
8.148496e-02
Chest width
52.95231
34
0.02018903
4.156565e-02
Days to 100 kg
130.20525
34
3.491473e-13
1.357795e-12
Days to 105 kg
66.93358
34
0.0006344765
1.551127e-03
Days to 110 kg
70.24565
34
0.0002530639
6.813259e-04
Days to 113 kg
15.17958
34
0.9977908
9.999990e-01
Days to 115 kg
27.85049
34
0.7623534
9.999990e-01
Days to 30 kg
23.21968
34
0.9185175
9.999990e-01
Days to 90 kg
29.73014
34
0.6770201
9.873210e-01
Femur bone mineral density
14.34779
34
0.99876
9.999990e-01
Femur length
198.07491
34
4.745677e-25
2.768312e-24
Hip bone length
95.06797
34
1.095364e-07
3.485249e-07
Humerus length
232.52392
34
1.986466e-31
1.390526e-30
Lipid accretion rate
66.76224
34
0.0006647686
1.551127e-03
Loin eye area linear
27.20576
34
0.7892631
9.999990e-01
Physis score
8.08711
34
0.9999987
9.999990e-01
Protein accretion rate
19.32835
34
0.979539
9.999990e-01
Rump width
35.65953
34
0.3902383
5.938409e-01
Scapula length
66.20542
34
0.0007730661
1.691082e-03
Tibia length
266.79184
34
6.361277e-38
5.566117e-37
Ulna length
175.98779
34
4.583733e-21
2.005383e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
53598.063400
Number of traits:
35
df
=
612
Number of QTLs:
4,595
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
