Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of egg production traits:
8
Number of QTL / associations found:
1,520
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are egg production traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
20.48928
28
0.8459815
9.999943e-01
Chromosome 1
2407.28928
28
9e-41
1.864286e-40
Chromosome 2
849.10512
28
1.003385e-160
1.454908e-159
Chromosome 3
0.02616
28
0.998329325823115
9.999943e-01
Chromosome 4
0.02616
28
0.998329325823115
9.999943e-01
Chromosome 5
26999.42088
28
9e-41
1.864286e-40
Chromosome 6
27.46296
28
0.4931592
6.218094e-01
Chromosome 7
98.57880
28
8.597875e-10
1.187326e-09
Chromosome 8
249.28928
28
2.314137e-37
4.194373e-37
Chromosome 9
114.70512
28
1.853237e-12
2.828625e-12
Chromosome 10
17.10512
28
0.9464835
9.999943e-01
Chromosome 11
76.67880
28
2.063092e-06
2.719530e-06
Chromosome 12
6.27880
28
0.9999943
9.999943e-01
Chromosome 13
106.48928
28
4.382821e-11
6.355090e-11
Chromosome 14
314.78928
28
2.806321e-50
7.398483e-50
Chromosome 15
328.80512
28
4.455938e-53
1.435802e-52
Chromosome 16
403.46296
28
3.851957e-68
2.792669e-67
Chromosome 17
123.22616
28
6.514759e-14
1.049600e-13
Chromosome 18
372.68400
28
6.663133e-62
3.864617e-61
Chromosome 19
261.77880
28
8.432664e-40
1.630315e-39
Chromosome 20
0.30512
28
0.998329325823115
9.999943e-01
Chromosome 21
343.12616
28
6.002482e-56
2.175900e-55
Chromosome 22
357.75248
28
6.862877e-59
3.317057e-58
Chromosome 23
314.78928
28
2.806321e-50
7.398483e-50
Chromosome 24
301.07880
28
1.498548e-47
3.621491e-47
Chromosome 26
343.12616
28
6.002482e-56
2.175900e-55
Chromosome 27
160.36296
28
1.629017e-20
2.778911e-20
Chromosome 28
1544.26296
28
2.634083e-308
7.638841e-307
Chromosome 33
403.46296
28
3.851957e-68
2.792669e-67
Chi-squared (χ2) test: Which of the 8 egg production traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first egg
247.25796
7
1.062038e-49
2.832101e-49
Egg number
134.13106
7
8.604564e-26
1.376730e-25
Egg production rate
202.54879
7
3.311374e-40
6.622748e-40
Number of egg-laying days
400.52681
7
1.838926e-82
7.355704e-82
Ovarian follicle weight
22.61796
7
0.001986235
1.986235e-03
Pre-ovulatory follicle number
30.15729
7
8.885386e-05
1.015473e-04
Qualifying egg number
56.46156
7
7.647429e-10
1.019657e-09
Small yellow follicle number
1058.29979
7
3.037693e-224
2.430154e-223
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
36545.958240
Number of traits:
8
df
=
196
Number of QTLs:
1,520
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
