Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of coat color traits:
4
Number of QTL / associations found:
117
Number of chromosomes where QTL / associations are found:
7
Chi-squared (χ2) test: are coat color traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
59.09644
6
6.867174e-11
2.403511e-10
Chromosome 3
841.14776
6
1.97608e-178
1.383256e-177
Chromosome 7
14.24176
6
0.02704912
3.155731e-02
Chromosome 16
0.39560
6
0.9988872
9.988872e-01
Chromosome 22
22.58364
6
0.0009486199
1.328068e-03
Chromosome 23
38.68620
6
8.246142e-07
1.443075e-06
Chromosome 25
51.81440
6
2.032135e-09
4.741648e-09
Chi-squared (χ2) test: Which of the 4 coat color traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Coat color
49.23246
3
1.163965e-10
4.655860e-10
White markings
14.01936
3
0.002878919
5.757838e-03
face markings
2.01974
3
0.5683197
5.683197e-01
leg markings
5.5
3
0.1386386
1.848515e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
7
χ2
=
1027.965800
Number of traits:
4
df
=
18
Number of QTLs:
117
p-value
=
7.394876e-207
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
