Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of udder traits traits:
17
Number of QTL / associations found:
4,065
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are udder traits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3272.31181
29
9e-41
1.800000e-40
Chromosome 1
19.60338
29
0.9048276
9.999902e-01
Chromosome 2
386.45199
29
4.099297e-64
1.117990e-63
Chromosome 3
124.48896
29
8.477987e-14
1.271698e-13
Chromosome 4
88.10522
29
7.104532e-08
9.687998e-08
Chromosome 5
2656.04617
29
9e-41
1.800000e-40
Chromosome 6
2039.52944
29
9e-41
1.800000e-40
Chromosome 7
414.80629
29
7.388808e-70
2.216642e-69
Chromosome 8
571.63282
29
4.85461e-102
1.820479e-101
Chromosome 9
140.79893
29
1.245509e-16
1.966593e-16
Chromosome 10
1531.91335
29
8.51617e-305
2.554851e-303
Chromosome 11
1027.55905
29
1.294039e-197
1.294039e-196
Chromosome 12
271.27852
29
3.643322e-41
9.108305e-41
Chromosome 13
167.14570
29
2.314977e-21
3.858295e-21
Chromosome 14
792.94647
29
3.477661e-148
1.490426e-147
Chromosome 15
521.95015
29
8.781264e-92
2.927088e-91
Chromosome 16
16.59217
29
0.968142
9.999902e-01
Chromosome 17
47.70659
29
0.01576135
1.891362e-02
Chromosome 18
109.18267
29
3.155753e-11
4.508219e-11
Chromosome 19
0.78421
29
0.998329325823115
9.999902e-01
Chromosome 20
63.51472
29
0.0002213007
2.766259e-04
Chromosome 21
1.53697
29
0.998329325823115
9.999902e-01
Chromosome 22
185.96487
29
7.859865e-25
1.387035e-24
Chromosome 23
81.58113
29
6.783143e-07
8.847578e-07
Chromosome 24
874.74724
29
2.25256e-165
1.689420e-164
Chromosome 25
1096.81365
29
2.852117e-212
4.278176e-211
Chromosome 26
7.05721
29
0.9999902
9.999902e-01
Chromosome 27
205.78789
29
1.506223e-28
2.824168e-28
Chromosome 28
792.94647
29
3.477661e-148
1.490426e-147
Chromosome 29
833.34510
29
1.146680e-156
6.880080e-156
Chi-squared (χ2) test: Which of the 17 udder traits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Teat length
112.0158
16
1.854243e-16
1.050738e-15
Teat number
441.38798
16
7.444803e-84
1.265617e-82
Teat placement
61.19975
16
3.282001e-07
7.970574e-07
Teat structure
51.29466
16
1.422854e-05
2.502106e-05
Teat thickness
22.72862
16
0.1211840
1.373419e-01
Udder attachment
22.77305
16
0.1199374
1.373419e-01
Udder balance
75.43582
16
1.093693e-09
3.718556e-09
Udder capacity
20.28272
16
0.2077561
2.207409e-01
Udder cleft
61.58821
16
2.820232e-07
7.970574e-07
Udder composite index
85.63238
16
1.582333e-11
6.724915e-11
Udder depth
37.55544
16
0.001750436
2.289032e-03
Udder height
51.20317
16
1.471827e-05
2.502106e-05
Udder quality
14.45627
16
0.5647625
5.647625e-01
Udder structure
42.91691
16
0.0002876144
4.444950e-04
Udder swelling score
120.86849
16
3.738817e-18
3.177994e-17
Udder texture
40.69788
16
0.0006152189
8.715601e-04
Udder width
59.17259
16
7.210076e-07
1.532141e-06
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
18344.129140
Number of traits:
17
df
=
464
Number of QTLs:
4,065
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
