Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of organ disorders traits:
4
Number of QTL / associations found:
1,624
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are organ disorders traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
143.92248
29
3.496073e-17
5.826788e-17
Chromosome 1
150.51856
29
2.34306e-18
4.134812e-18
Chromosome 2
71.62200
29
1.813159e-05
1.942670e-05
Chromosome 3
150.51856
29
2.34306e-18
4.134812e-18
Chromosome 4
96.47424
29
3.557625e-09
3.952917e-09
Chromosome 5
157.26240
29
1.440262e-19
2.880524e-19
Chromosome 6
81755.42988
29
9e-41
1.350000e-39
Chromosome 7
164.15404
29
8.123928e-21
1.874753e-20
Chromosome 8
107.44960
29
6.078485e-11
7.928459e-11
Chromosome 9
178.38064
29
2.000983e-23
6.669943e-23
Chromosome 10
58.48408
29
0.0009498924
9.826473e-04
Chromosome 11
125.02100
29
6.875092e-14
9.821560e-14
Chromosome 12
1864.92248
29
9e-41
1.350000e-39
Chromosome 13
125.02100
29
6.875092e-14
9.821560e-14
Chromosome 14
46.67620
29
0.02007682
2.007682e-02
Chromosome 15
171.19344
29
4.206983e-22
1.051746e-21
Chromosome 16
119.01608
29
7.21793e-13
9.842632e-13
Chromosome 17
101.88800
29
4.868641e-10
5.842369e-10
Chromosome 18
171.19344
29
4.206983e-22
1.051746e-21
Chromosome 19
157.26240
29
1.440262e-19
2.880524e-19
Chromosome 20
101.88800
29
4.868641e-10
5.842369e-10
Chromosome 21
171.19344
29
4.206983e-22
1.051746e-21
Chromosome 22
200.82888
29
1.298052e-27
7.788312e-27
Chromosome 23
96.47424
29
3.557625e-09
3.952917e-09
Chromosome 24
131.17372
29
5.992081e-15
9.461181e-15
Chromosome 25
185.71560
29
8.745317e-25
3.279494e-24
Chromosome 26
185.71560
29
8.745317e-25
3.279494e-24
Chromosome 27
208.60724
29
4.411543e-29
3.308657e-28
Chromosome 28
193.19836
29
3.513454e-26
1.756727e-25
Chromosome 29
208.60724
29
4.411543e-29
3.308657e-28
Chi-squared (χ2) test: Which of the 4 organ disorders traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abomasum displacement
265.06305
3
3.610222e-57
3.610222e-57
Bilateral convergent strabismus with exophthalmus
1302.53069
3
4.15644e-282
1.662576e-281
Intestinal atresia
619.80369
3
5.129853e-134
1.025971e-133
Liver abscess
436.17483
3
3.225535e-94
4.300713e-94
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
87599.812840
Number of traits:
4
df
=
87
Number of QTLs:
1,624
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
