Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
27
Number of QTL / associations found:
16,347
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
5070.78792
29
9e-41
9.310345e-41
Chromosome 1
983.71422
29
2.385562e-188
2.385562e-187
Chromosome 2
1054.76931
29
2.271160e-203
3.406740e-202
Chromosome 3
2080.32354
29
9e-41
9.310345e-41
Chromosome 4
1901.58543
29
9e-41
9.310345e-41
Chromosome 5
465.25860
29
3.825813e-80
2.869360e-79
Chromosome 6
1986746.63436
29
9e-41
9.310345e-41
Chromosome 7
124.37199
29
8.87746e-14
8.877460e-14
Chromosome 8
2734.09128
29
9e-41
9.310345e-41
Chromosome 9
3424.74399
29
9e-41
9.310345e-41
Chromosome 10
2804.37336
29
9e-41
9.310345e-41
Chromosome 11
350.46027
29
7.217175e-57
4.330305e-56
Chromosome 12
7076.21049
29
9e-41
9.310345e-41
Chromosome 13
1054.76931
29
2.271160e-203
3.406740e-202
Chromosome 14
15158.43180
29
9e-41
9.310345e-41
Chromosome 15
4697.49510
29
9e-41
9.310345e-41
Chromosome 16
3398.74002
29
9e-41
9.310345e-41
Chromosome 17
5792.22144
29
9e-41
9.310345e-41
Chromosome 18
7805.65140
29
9e-41
9.310345e-41
Chromosome 19
4851.29952
29
9e-41
9.310345e-41
Chromosome 20
5140.77273
29
9e-41
9.310345e-41
Chromosome 21
2996.15328
29
9e-41
9.310345e-41
Chromosome 22
5962.87305
29
9e-41
9.310345e-41
Chromosome 23
6853.29309
29
9e-41
9.310345e-41
Chromosome 24
6489.69246
29
9e-41
9.310345e-41
Chromosome 25
7963.77663
29
9e-41
9.310345e-41
Chromosome 26
8778.18654
29
9e-41
9.310345e-41
Chromosome 27
7688.09826
29
9e-41
9.310345e-41
Chromosome 28
7845.03414
29
9e-41
9.310345e-41
Chromosome 29
8570.86785
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 27 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
13.82603
26
0.9752218
9.752218e-01
Average daily gain
834.45653
26
3.774478e-159
3.397030e-158
BWF scaled by BWI
127.2758
26
2.603440e-15
4.134875e-15
Body capacity
62.20937
26
8.403235e-05
1.031306e-04
Body circumference
252.41307
26
5.818921e-39
1.309257e-38
Body depth
967.44752
26
2.931964e-187
7.916303e-186
Body height
510.11435
26
2.819886e-91
1.268949e-90
Body length
255.91507
26
1.190114e-39
2.921189e-39
Body size
49.46042
26
0.003644526
4.100092e-03
Body weight
577.93749
26
2.347982e-105
1.267910e-104
Body weight gain
504.73878
26
3.652059e-90
1.408651e-89
Cannon bone circumference
703.51978
26
1.325162e-131
8.944843e-131
Chest width
129.46483
26
1.065243e-15
1.797598e-15
Finishing precocity
318.517
26
4.107638e-52
1.232291e-51
Growth index
135.50678
26
8.891323e-17
1.714755e-16
Head length
55.79116
26
0.0006004417
7.048663e-04
Head width
114.98357
26
3.680076e-13
5.520114e-13
Hip width
218.39219
26
2.540423e-32
5.276263e-32
Longissimus muscle area growth
65.37723
26
3.048113e-05
3.919002e-05
Maturity rate
456.52523
26
3.243616e-80
1.094720e-79
Metabolic body weight
2495.35013
26
9e-41
2.430000e-40
Relative growth rate
101.18914
26
8.133402e-11
1.155799e-10
Rump length
131.33182
26
4.958068e-16
8.924522e-16
Rump width
840.03989
26
2.506773e-160
3.384144e-159
Shoulder width
36.72939
26
0.07904829
8.537215e-02
Subcutaneous fat increase
35.48883
26
0.1014780
1.053810e-01
Thigh width (maximum)
99.8922
26
1.33758e-10
1.805733e-10
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
2125864.681380
Number of traits:
27
df
=
754
Number of QTLs:
16,347
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
