Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of mastitis traits:
3
Number of QTL / associations found:
8,735
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are mastitis traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
614.26017
29
7.078439e-111
3.539220e-110
Chromosome 1
323.40270
29
1.844001e-51
2.634287e-51
Chromosome 2
416.95737
29
2.701745e-70
4.767785e-70
Chromosome 3
193.85490
29
2.64744e-26
2.738731e-26
Chromosome 4
446.47998
29
2.630374e-76
6.070094e-76
Chromosome 5
226.19376
29
1.974205e-32
2.115220e-32
Chromosome 6
285702.35403
29
9e-41
1.080000e-40
Chromosome 7
327.06381
29
3.438147e-52
5.157221e-52
Chromosome 8
517.75185
29
6.427578e-91
1.928273e-90
Chromosome 9
463.80339
29
7.59338e-80
1.898345e-79
Chromosome 10
421.11306
29
3.864555e-71
7.246041e-71
Chromosome 11
437.94189
29
1.450026e-74
3.107199e-74
Chromosome 12
655.17144
29
2.202757e-119
1.652068e-118
Chromosome 13
376.53378
29
4.119405e-62
6.504324e-62
Chromosome 14
46.48227
29
0.02100006
2.100006e-02
Chromosome 15
254.50743
29
6.796076e-38
7.841626e-38
Chromosome 16
408.70779
29
1.277779e-68
2.129632e-68
Chromosome 17
421.11306
29
3.864555e-71
7.246041e-71
Chromosome 18
226.19376
29
1.974205e-32
2.115220e-32
Chromosome 19
1807.43247
29
9e-41
1.080000e-40
Chromosome 20
301.86864
29
3.472286e-47
4.734935e-47
Chromosome 21
599.25843
29
9.184484e-108
3.444181e-107
Chromosome 22
614.26017
29
7.078439e-111
3.539220e-110
Chromosome 23
513.14283
29
5.71045e-90
1.557395e-89
Chromosome 24
724.46508
29
7.650978e-134
1.147647e-132
Chromosome 25
735.43476
29
3.886354e-136
1.165906e-134
Chromosome 26
298.35174
29
1.722220e-46
2.246374e-46
Chromosome 27
609.23898
29
7.803966e-110
3.344557e-109
Chromosome 28
713.57784
29
1.443208e-131
1.443208e-130
Chromosome 29
594.29907
29
9.80422e-107
3.268073e-106
Chi-squared (χ2) test: Which of the 3 mastitis traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Clinical mastitis
1144.02191
2
3.791392e-249
1.137418e-248
Somatic cell count
437.12443
2
1.201257e-95
1.201257e-95
Somatic cell score
740.18164
2
1.868956e-161
2.803434e-161
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
299991.216450
Number of traits:
3
df
=
58
Number of QTLs:
8,735
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
