NRSP-8: NAGRP Aquaculture Genome Program

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Characterization of the rainbow trout transcriptome using Sanger and Next GENeration sequencing

Moh Salem (
Division of Animal and Nutritional Sciences, West Virginia University

This rainbow trout transcriptome reference sequence was assembled using ~1.3 million 454-pyrosequencing ESTs (average length of 344bp, a total of 447 million bases) of a Swanson rainbow trout doubled-haploid fish in addition to the 258,973 Sanger-based sequences downloaded from the Trout Gene Index database release 7.0, July 6, 2008, The assembly resulted in 161,818 TCs (Average length 758 nt) and 261,071 singletons. For inquiries, please contact: Moh Salem (
  • Rainbow Trout EST Contigs
    (Last updated: Jan 25, 2011)
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  • Rainbow Trout EST Singletons
    (Last updated: Sep 27, 2010)
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